pgmcs This package implements the simulation in 20.2 of “Genetics From Genes to Genomes, 5th”.
bisecpp General-purpose optimization using enhanced bisection method. It also contains functions for solving equations and model fitting. Still developing, push request in GitHub is welcomed.
biozhuoer Some utility functions in bioinformatics, still in developing, use at your own risks.
Rcppzhuoer Utility functions for programming with Rcpp
paristools Utility for working with PARIS data
zhuoerdown build others’ bookdown book in Zhuoer Dong’s preference
libzhuoer utility functions, my other packages may depend on them.
minir R package template in Zhuoer’s style
qGSEA GSEA is a powerful tool, but preparing its input files, escpecially from GSE raw data, is a painful process. I know that from very personal experience, that’s why I develop thistool. You just need a GSE accession and qGSEA would take care of everything else for you.
rGEO This package contains functions to read GSE raw data and returns a tidy format. It’s especially useful for chip annotation file, the format of which is really in a messy. You just need to provide the raw data file and it will give you a nice table containing probes and HUGO gene symbols.
rGEO.data This package contains several big data and functions to create them from GEO (Gene Expression Omnibus). They are meta data of GPL and GSE database, and of all platforms. It’s used in the testing of rGEO.
rget fetch contents of a website
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