Reading various files

read .sam, .bed, .duplexgroup file

read_bed()

read .bed file

read_duplexgroup()

read .duplexgroup file

read_sam()

read .sam file

Genome coverage of reads

sam_to_loc_df

find all mapped region in a .sam data.frame

cal_coverage()

calculate genome coverage

get_dg_coverage()

calculate average coverage of duplex group segment

Utility functions