This package include several data, and functions to create them.
rGEO.data::dataset# A tibble: 23,210 x 8
accession type species ftp platform data_type title description
<chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
1 GDS6177 DataS… Homo sa… ftp://f… Platform… "\tExpress… Acute … Analysis of …
2 GDS6100 DataS… Homo sa… ftp://f… Platform… "\tExpress… MicroR… Analysis of …
3 GDS6083 DataS… Homo sa… ftp://f… Platform… "\tExpress… Chroni… Analysis of …
4 GDS6082 DataS… Homo sa… ftp://f… Platform… "\tExpress… Sendai… Analysis of …
5 GDS6063 DataS… Homo sa… ftp://f… Platform… "\tExpress… Influe… Analysis of …
6 GDS6010 DataS… Homo sa… ftp://f… Platform… "\tExpress… Influe… Analysis of …
# … with 23,204 more rows
rGEO.data::platform# A tibble: 5,005 x 9
Accession Title Technology Taxonomy `Data Rows` `Samples Count` `Series Count`
<chr> <chr> <chr> <chr> <chr> <chr> <chr>
1 GPL26511 Infi… oligonucl… Homo sa… 244770 0 0
2 GPL26393 TaqM… RT-PCR Homo sa… 28 687 1
3 GPL26355 Agil… in situ o… Homo sa… 34197 0 0
4 GPL26381 NNII… in situ o… Homo sa… 1856 41 2
5 GPL24052 [HG-… in situ o… Homo sa… 24898 17 1
6 GPL24804 Biom… RT-PCR Homo sa… 50 331 1
# … with 4,999 more rows, and 2 more variables: Contact <chr>, `Release
# Date` <chr>
rGEO.data::gpl_metas[1:2]
#> $GPL21790
#> $GPL21790$info
#> # A tibble: 2 x 2
#> name description
#> <chr> <chr>
#> 1 ID ""
#> 2 ORF ""
#>
#> $GPL21790$sample
#> # A tibble: 20 x 2
#> ID ORF
#> <chr> <chr>
#> 1 ACTA2 ACTA2
#> 2 ACTB ACTB
#> 3 AFP AFP
#> 4 B3GALT5 B3GALT5
#> 5 BMP2 BMP2
#> 6 BMP4 BMP4
#> # … with 14 more rows
#>
#>
#> $GPL24205
#> $GPL24205$info
#> # A tibble: 10 x 2
#> name description
#> <chr> <chr>
#> 1 ID Probe Name
#> 2 GB_ACC GenBank or RefSeq accession number
#> 3 GenbankID GenBank or RefSeq accession number
#> 4 GB_RANGE RefSeq accession.version[start..end]
#> 5 Symbol Symbol
#> 6 ENTREZ_GENE_ID Entrez Gene ID
#> # … with 4 more rows
#>
#> $GPL24205$sample
#> # A tibble: 20 x 10
#> ID GB_ACC GenbankID GB_RANGE Symbol ENTREZ_GENE_ID Description ControlType
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 EPI_… NM_00… "" "" <NA> "" <NA> 0
#> 2 EPI_… NM_00… "" "" <NA> "" <NA> 0
#> 3 EPI_… NM_00… "" "" <NA> "" <NA> 0
#> 4 EPI_… NM_00… "" "" <NA> "" <NA> 0
#> 5 EPI_… NM_00… "" "" <NA> "" <NA> 0
#> 6 EPI_… NM_00… "" "" <NA> "" <NA> 0
#> # … with 14 more rows, and 2 more variables: SEQUENCE <chr>, SPOT_ID <chr>