This package include several data, and functions to create them.

Data

rGEO.data::dataset
# A tibble: 23,210 x 8
  accession type   species  ftp      platform  data_type   title   description  
  <chr>     <chr>  <chr>    <chr>    <chr>     <chr>       <chr>   <chr>        
1 GDS6177   DataS… Homo sa… ftp://f… Platform… "\tExpress… Acute … Analysis of …
2 GDS6100   DataS… Homo sa… ftp://f… Platform… "\tExpress… MicroR… Analysis of …
3 GDS6083   DataS… Homo sa… ftp://f… Platform… "\tExpress… Chroni… Analysis of …
4 GDS6082   DataS… Homo sa… ftp://f… Platform… "\tExpress… Sendai… Analysis of …
5 GDS6063   DataS… Homo sa… ftp://f… Platform… "\tExpress… Influe… Analysis of …
6 GDS6010   DataS… Homo sa… ftp://f… Platform… "\tExpress… Influe… Analysis of …
# … with 23,204 more rows
rGEO.data::platform
# A tibble: 5,005 x 9
  Accession Title Technology Taxonomy `Data Rows` `Samples Count` `Series Count`
  <chr>     <chr> <chr>      <chr>    <chr>       <chr>           <chr>         
1 GPL26511  Infi… oligonucl… Homo sa… 244770      0               0             
2 GPL26393  TaqM… RT-PCR     Homo sa… 28          687             1             
3 GPL26355  Agil… in situ o… Homo sa… 34197       0               0             
4 GPL26381  NNII… in situ o… Homo sa… 1856        41              2             
5 GPL24052  [HG-… in situ o… Homo sa… 24898       17              1             
6 GPL24804  Biom… RT-PCR     Homo sa… 50          331             1             
# … with 4,999 more rows, and 2 more variables: Contact <chr>, `Release
#   Date` <chr>
rGEO.data::gpl_metas[1:2]
#> $GPL21790
#> $GPL21790$info
#> # A tibble: 2 x 2
#>   name  description
#>   <chr> <chr>      
#> 1 ID    ""         
#> 2 ORF   ""         
#> 
#> $GPL21790$sample
#> # A tibble: 20 x 2
#>   ID      ORF    
#>   <chr>   <chr>  
#> 1 ACTA2   ACTA2  
#> 2 ACTB    ACTB   
#> 3 AFP     AFP    
#> 4 B3GALT5 B3GALT5
#> 5 BMP2    BMP2   
#> 6 BMP4    BMP4   
#> # … with 14 more rows
#> 
#> 
#> $GPL24205
#> $GPL24205$info
#> # A tibble: 10 x 2
#>   name           description                         
#>   <chr>          <chr>                               
#> 1 ID             Probe Name                          
#> 2 GB_ACC         GenBank or RefSeq accession number  
#> 3 GenbankID      GenBank or RefSeq accession number  
#> 4 GB_RANGE       RefSeq accession.version[start..end]
#> 5 Symbol         Symbol                              
#> 6 ENTREZ_GENE_ID Entrez Gene ID                      
#> # … with 4 more rows
#> 
#> $GPL24205$sample
#> # A tibble: 20 x 10
#>   ID    GB_ACC GenbankID GB_RANGE Symbol ENTREZ_GENE_ID Description ControlType
#>   <chr> <chr>  <chr>     <chr>    <chr>  <chr>          <chr>       <chr>      
#> 1 EPI_… NM_00… ""        ""       <NA>   ""             <NA>        0          
#> 2 EPI_… NM_00… ""        ""       <NA>   ""             <NA>        0          
#> 3 EPI_… NM_00… ""        ""       <NA>   ""             <NA>        0          
#> 4 EPI_… NM_00… ""        ""       <NA>   ""             <NA>        0          
#> 5 EPI_… NM_00… ""        ""       <NA>   ""             <NA>        0          
#> 6 EPI_… NM_00… ""        ""       <NA>   ""             <NA>        0          
#> # … with 14 more rows, and 2 more variables: SEQUENCE <chr>, SPOT_ID <chr>

Function

see function reference