This package contains functions to read GSE raw data and returns a tidy format. It’s especially useful for chip annotation file, the format of which is really in a messy. You just need to provide the raw data file and it will give you a nice table containing probes and HUGO gene symbols.
Inpatient people please refer to
For why this package, read this
Wired as it seems, it’s best way I can think about so far to maintain reproducibility.
Basically, you make change in
Load All (C-S-L, or ), then Knit
R-raw/platform.Rmd to check whether the rule returns exactly what you want. (you can also execute all chunk before, and then repeat modify rule - load- run a specific chunk to save time)